PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G010300.1
Common NamePHAVU_002G010300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 300aa    MW: 32485.7 Da    PI: 10.5184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G010300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Phvul.002G010300.1  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
                        79***********************************9***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.669161IPR017930Myb domain
SuperFamilySSF466896.63E-15267IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12456IPR009057Homeodomain-like
PfamPF002493.0E-7555IPR001005SANT/Myb domain
CDDcd116601.78E-17657No hitNo description
SMARTSM005267.0E-15122187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.58E-16122201IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-15123193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.912124192IPR005818Linker histone H1/H5, domain H15
PfamPF005381.4E-10130185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLPSP KIDNNHMALS TVVQRDRGAA DSKPLAVSGG ISPNSKEKVS  120
RPQNNFQLDT LILESIIKLK EPKGSDRAAI ASYIEDQYCS TPTLRKLLST KLKHMVASGK  180
LMKVKHKYRI ATNLTMSEKR RCSSLLLLEG RPKDSPKTEK TGVNILSKSE IDAELSKMKG  240
VTPQEAAAAA AKAVAEAEAA IAEAEAAARE ADAAEAEAEA ARVFAKAAIK ALKCKTLHI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-175AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156706.10.0hypothetical protein PHAVU_002G010300g
SwissprotQ9FJW59e-75TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLV7CHF90.0V7CHF9_PHAVU; Uncharacterized protein
STRINGGLYMA01G40220.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-69telomere repeat binding factor 1